Synthesis of New 1,3,4-Oxadiazole Derivatives: Molecular Docking Simulation and Biological Activity Study Against Resistant Bacteria with ADME Properties Analysis

  • Zina Hassan Department of Chemistry, College of Science, University of Thi-Qar, Thi-Qar, 64001, Iraq
  • Abdulrhman Khalifa The General Directorate of Education in Muthanna, Samawah, 66001, Iraq
Keywords: 1,3,4-Oxadiazole Derivatives, Antibacterial, Molecular Docking, β-lactamase, DNA Gyrase (Gyr-A)

Abstract

In this research, we synthesized two new compounds from 1,3,4-oxadiazole derivatives namely compound 5 and compound 7. The biological activity of these two compounds against six different types of bacteria viz. Pseudomonas aeruginosa (MDR), Escherichia coli 44, Escherichia coli 41, Klebsiella pneumoniae 49, Klebsiella pneumoniae 6 and Acinetobacter baumannii 17 were evaluated with the help of antibacterial activity assay. The results indicated that compound 5 exhibited high activity against some bacterial species relative to the standard antibiotic, imipenem. Compound 7 had excellent activities against multi-drug-resistant bacteria. Simulation of the two compounds using Molecular Docking simulations through the molecular simulation program was also done, which gave excellent results indicating strong and possible interactions of the two compounds with bacterial targets. The results indicate that compound 5 has promising potential in treating bacterial infections, and these results are an important step towards the development of new antibiotics with higher efficacy. The compounds were characterized using spectroscopic techniques: FT-IR, 1H-NMR, 13C-NMR and Mass spectra which confirmed the chemical structures of the compounds.

References

D. Kumar et al., “Benzylidene/2-chlorobenzylidene hydrazides: Synthesis, antimicrobial activity, QSAR studies and antiviral evaluation,” Eur. J. Med. Chem., vol. 45, no. 7, pp. 2806–2816, 2010.

A. Goel, N. Aggarwal, and S. Jain, “Novel methodology for synthesis and computational analysis of zinc complexes of isatin derivatives and screening their biological activity,” Anti-Infective Agents, vol. 20, no. 5, pp. 46–55, 2022.

R. K. Sharma et al., “In silico and in vitro screening constituents of eclipta alba leaf extract to reveal antimicrobial potential,” Evidence‐Based Complement. Altern. Med., vol. 2022, no. 1, p. 3290790, 2022.

D. Tiwari, R. Narang, K. Sudhakar, V. Singh, S. Lal, and M. Devgun, “1, 3, 4‐oxadiazole derivatives as potential antimicrobial agents,” Chem. Biol. Drug Des., vol. 100, no. 6, pp. 1086–1121, 2022.

I. R. G. Capoci et al., “Two new 1, 3, 4-oxadiazoles with effective antifungal activity against Candida albicans,” Front. Microbiol., vol. 10, p. 2130, 2019.

T. Glomb and P. Świątek, “Antimicrobial activity of 1, 3, 4-oxadiazole derivatives,” Int. J. Mol. Sci., vol. 22, no. 13, p. 6979, 2021.

K. Rana, Salahuddin, and J. K. Sahu, “Significance of 1, 3, 4-oxadiazole containing compounds in new drug development,” Curr. Drug Res. Rev. Former. Curr. Drug Abus. Rev., vol. 13, no. 2, pp. 90–100, 2021.

A. Y. Khalifa, M. S. Magtoof, and H. M. Kredy, “Synthesis, spectral characterization, antioxidant and anticancer evaluation of 1, 2, 3-trisubstituted-γ-lactams,” in AIP Conference Proceedings, 2022, vol. 2398, no. 1.

D. Kumar, H. Kumar, A. Deep, and R. Kumar Marwaha, “An updated study of traditional medicines to the era of 1, 3, 4 oxadiazole derivatives for malaria treatment,” Tradit. Med. Res, vol. 8, no. 5, 2023.

P. Dinesha, D. Udayakumar, V. P. Shetty, and V. K. Deekshit, “Design, synthesis, characterization, and biological evaluation of novel pyrazine-1, 3, 4-oxadiazole/[1, 2, 4] triazolo [3, 4-b][1, 3, 4] thiadiazine hybrids as potent antimycobacterial agents,” J. Mol. Struct., vol. 1304, p. 137657, 2024.

N. Aggarwal, S. Jain, and N. Chopra, “Hybrids of thiazolidin-4-ones and 1, 3, 4-thiadiazole: Synthesis and biological screening of a potential new class of acetylcholinesterae inhibitors,” Biointerface Res. Appl. Chem, vol. 12, pp. 2800–2812, 2022.

A. Ergena, Y. Rajeshwar, and G. Solomon, “Synthesis and Diuretic Activity of Substituted 1, 3, 4‐Thiadiazoles,” Scientifica (Cairo)., vol. 2022, no. 1, p. 3011531, 2022.

T. Anthwal and S. Nain, “1, 3, 4-thiadiazole scaffold: As anti-epileptic agents,” Front. Chem., vol. 9, p. 671212, 2022.

D. G. Shiferaw and B. Kalluraya, “Synthesis, characterization, biological evaluation, and molecular docking studies of new 1, 3, 4-oxadiazole-thioether derivative as antioxidants and cytotoxic agents,” Heliyon, vol. 10, no. 7, 2024.

M. Lelyukh et al., “Approaches for synthesis and chemical modification of non-condensed heterocyclic systems based on 1, 3, 4-oxadiazole ring and their biological activity: A review,” J. Appl. Pharm. Sci., vol. 10, no. 10, pp. 151–165, 2020.

B. Jadhaw, B. Gandhi, M. Jhansi, S. Misra, and S. S. Kaki, “Synthesis and biological evaluation of novel lipophilic chromene based 1, 3, 4-oxadiazoles for anti-cancer and anti-inflammatory activity,” Arab. J. Sci. Eng., vol. 49, no. 1, pp. 221–230, 2024.

M. M. G. El-Din, M. I. El-Gamal, M. S. Abdel-Maksoud, K. H. Yoo, and C.-H. Oh, “Synthesis and in vitro antiproliferative activity of new 1, 3, 4-oxadiazole derivatives possessing sulfonamide moiety,” Eur. J. Med. Chem., vol. 90, pp. 45–52, 2015.

G. Verma et al., “Synthesis of pyrazole acrylic acid based oxadiazole and amide derivatives as antimalarial and anticancer agents,” Bioorg. Chem., vol. 77, pp. 106–124, 2018.

Y.-F. Wang et al., “Copper-catalyzed asymmetric 1, 6-conjugate addition of in situ generated para-quinone methides with β-ketoesters,” Chem. Commun., vol. 58, no. 46, pp. 6653–6656, 2022.

W. Yao, J. Wang, A. Zhong, S. Wang, and Y. Shao, “Transition-metal-free catalytic hydroboration reduction of amides to amines,” Org. Chem. Front., vol. 7, no. 21, pp. 3515–3520, 2020.

W. Yao et al., “Chemoselective hydroborative reduction of nitro motifs using a transition-metal-free catalyst,” Org. Chem. Front., vol. 8, no. 16, pp. 4554–4559, 2021.

W. Yao, J. Wang, A. Zhong, J. Li, and J. Yang, “Combined KOH/BEt₃ Catalyst for Selective Deaminative Hydroboration of Aromatic Carboxamides for Construction of Luminophores,” 2020.

B. S. Furinss, A. J. Hannaford, P. W. G. Smith, and A. R. Tatchell, “Vogel’s textbook of practical organic chemistry,” 1989.

M. Wang, T. Liu, S. Chen, M. Wu, J. Han, and Z. Li, “Design and synthesis of 3-(4-pyridyl)-5-(4-sulfamido-phenyl)-1, 2, 4-oxadiazole derivatives as novel GSK-3β inhibitors and evaluation of their potential as multifunctional anti-Alzheimer agents,” Eur. J. Med. Chem., vol. 209, p. 112874, 2021.

A. T. Feßler et al., “Antimicrobial susceptibility testing in veterinary medicine: Performance, interpretation of results, best practices and pitfalls,” One Heal. Adv., vol. 1, no. 1, p. 26, 2023.

S. H. Kadhim, “Synthesis and Chracterization of 1, 3, 4-oxadiazole derivatives with some new transition metal complexes,” J. kerbala Univ., vol. 10, no. 3, 2012.

F. Collin, S. Karkare, and A. Maxwell, “Exploiting bacterial DNA gyrase as a drug target: current state and perspectives,” Appl. Microbiol. Biotechnol., vol. 92, pp. 479–497, 2011.

S. R. Chitra, N. Ramalakshmi, S. Arunkumar, and P. Manimegalai, “A comprehensive review on DNA gyrase inhibitors,” Infect. Disord. Targets (Formerly Curr. Drug Targets-Infectious Disord., vol. 20, no. 6, pp. 765–777, 2020.

V. Agarwal, A. Tiwari, and P. Varadwaj, “An Extensive Review on β-lactamase Enzymes and their Inhibitors,” Curr. Med. Chem., vol. 30, no. 7, pp. 783–808, 2023.

D. Carcione, C. Siracusa, A. Sulejmani, V. Leoni, and J. Intra, “Old and new beta-lactamase inhibitors: molecular structure, mechanism of action, and clinical use,” Antibiotics, vol. 10, no. 8, p. 995, 2021.

C. I. Bustamante, G. L. Drusano, R. C. Wharton, and J. C. Wade, “Synergism of the combinations of imipenem plus ciprofloxacin and imipenem plus amikacin against Pseudomonas aeruginosa and other bacterial pathogens,” Antimicrob. Agents Chemother., vol. 31, no. 4, pp. 632–634, 1987.

Z. Iqbal et al., “Recent developments to cope the antibacterial resistance via β-lactamase inhibition,” Molecules, vol. 27, no. 12, p. 3832, 2022.

N. D’Atanasio et al., “Antibacterial activity of novel dual bacterial DNA type II topoisomerase inhibitors,” PLoS One, vol. 15, no. 2, p. e0228509, 2020.

M. T. Muhammed and E. Aki-Yalcin, “Computational insight into the mechanism of action of DNA gyrase inhibitors; revealing a new mechanism,” Curr. Comput. Aided. Drug Des., vol. 20, no. 3, pp. 224–235, 2024.

P. Piplani, A. Kumar, A. Kulshreshtha, T. Vohra, and V. Piplani, “Recent Development of DNA Gyrase Inhibitors: An Update,” Mini Rev. Med. Chem., vol. 24, no. 10, pp. 1001–1030, 2024.

K. Rajakumari et al., “Comprehensive review of DNA gyrase as enzymatic target for drug discovery and development,” Eur. J. Med. Chem. Reports, p. 100233, 2024.

M. Bugnon et al., “SwissDock 2024: major enhancements for small-molecule docking with Attracting Cavities and AutoDock Vina,” Nucleic Acids Res., vol. 52, no. W1, pp. W324–W332, 2024.

A. Grosdidier, V. Zoete, and O. Michielin, “SwissDock, a protein-small molecule docking web service based on EADock DSS,” Nucleic Acids Res., vol. 39, no. suppl_2, pp. W270–W277, 2011.

Published
2025-05-31
How to Cite
Hassan, Z., & Khalifa, A. (2025). Synthesis of New 1,3,4-Oxadiazole Derivatives: Molecular Docking Simulation and Biological Activity Study Against Resistant Bacteria with ADME Properties Analysis. Central Asian Journal of Medical and Natural Science, 6(3), 1177-1192. https://doi.org/10.17605/cajmns.v6i3.2819
Section
Articles